Variant report

Variant	rs62020974
Chromosome Location	chr15:92943759-92943760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17522085	1.00[ASN][1000 genomes]
rs62019761	1.00[AFR][1000 genomes]
rs62021048	1.00[ASN][1000 genomes]
rs62021050	1.00[ASN][1000 genomes]
rs62021052	1.00[ASN][1000 genomes]
rs7169995	1.00[ASN][1000 genomes]
rs7170164	1.00[ASN][1000 genomes]
rs74030522	1.00[ASN][1000 genomes]
rs8029064	1.00[ASN][1000 genomes]
rs8032091	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92939200-92946600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:92939600-92944400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:92939600-92946400	Enhancers	Fetal Brain Male	brain
4	chr15:92939600-92949600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:92939600-92949800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:92939600-92952200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:92939600-92956600	Weak transcription	Right Atrium	heart
8	chr15:92940400-92947000	Weak transcription	Fetal Stomach	stomach
9	chr15:92940600-92944400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:92942000-92950400	Weak transcription	Fetal Heart	heart
11	chr15:92942800-92958000	Weak transcription	Left Ventricle	heart
12	chr15:92943400-92944000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:92943400-92944600	Genic enhancers	Brain Germinal Matrix	brain
14	chr15:92943600-92943800	Flanking Active TSS	Fetal Brain Female	brain
15	chr15:92943600-92943800	Enhancers	HSMM	muscle
16	chr15:92943600-92945000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:92943600-92945400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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