Variant report

Variant	rs56413109
Chromosome Location	chr13:94086152-94086153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55671632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55950585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57874435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59402019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59618720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7322644	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7326501	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7329853	0.85[AMR][1000 genomes]
rs7333618	0.85[AMR][1000 genomes]
rs73550977	0.85[AMR][1000 genomes]
rs73552630	0.85[AMR][1000 genomes]
rs73552643	1.00[AMR][1000 genomes]
rs73552664	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73552676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552686	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108517	0.85[AMR][1000 genomes]
rs74108521	0.85[AMR][1000 genomes]
rs74108522	0.85[AMR][1000 genomes]
rs74108529	0.85[AMR][1000 genomes]
rs7996825	0.85[AMR][1000 genomes]
rs7998751	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94078400-94087400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:94081000-94090800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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