Variant report

Variant	rs7329853
Chromosome Location	chr13:94068432-94068433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55671632	0.85[AMR][1000 genomes]
rs55950585	0.85[AMR][1000 genomes]
rs56413109	0.85[AMR][1000 genomes]
rs57874435	0.85[AMR][1000 genomes]
rs59402019	0.85[AMR][1000 genomes]
rs59618720	0.85[AMR][1000 genomes]
rs7322644	1.00[AMR][1000 genomes]
rs7326501	0.85[AMR][1000 genomes]
rs7333618	1.00[AMR][1000 genomes]
rs73550977	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73552630	1.00[AMR][1000 genomes]
rs73552643	0.85[AMR][1000 genomes]
rs73552664	1.00[AMR][1000 genomes]
rs73552676	0.85[AMR][1000 genomes]
rs73552678	0.85[AMR][1000 genomes]
rs73552686	0.85[AMR][1000 genomes]
rs73552690	0.85[AMR][1000 genomes]
rs73552692	0.85[AMR][1000 genomes]
rs74108517	1.00[AMR][1000 genomes]
rs74108521	1.00[AMR][1000 genomes]
rs74108522	1.00[AMR][1000 genomes]
rs74108529	1.00[AMR][1000 genomes]
rs7996825	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7998751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2530447	chr13:94066922-94068460	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94058600-94077600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94066800-94073200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:94067000-94069800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:94067000-94071800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:94067000-94075400	Weak transcription	Fetal Lung	lung
6	chr13:94067200-94069000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:94067200-94069000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:94067200-94071600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:94067400-94068800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:94067400-94069000	Weak transcription	NH-A	brain
11	chr13:94067400-94071200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:94067400-94071400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:94067400-94071400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:94067400-94071600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:94067400-94071600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:94067400-94071800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:94067400-94071800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:94067600-94068800	Weak transcription	Osteobl	bone
19	chr13:94067600-94071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr13:94067600-94071800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:94067600-94072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:94067800-94071200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links