Variant report

Variant	rs564272600
Chromosome Location	chr15:41590957-41590958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC012652.1.1-1	chr15:41590239-41598727	XLOC_011226
2	lnc-OIP5-1	chr15:41590239-41594387	XLOC_011448
3	lnc-AC012652.1.1-1	chr15:41590239-41598727	XLOC_011226
4	lnc-OIP5-1	chr15:41588773-41598741	XLOC_011448

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv984057	chr15:41590328-41596272	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
3	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:41578000-41591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:41578200-41591800	Strong transcription	Fetal Stomach	stomach
6	chr15:41578200-41592600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:41578400-41592600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:41578800-41591800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:41579200-41593200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:41579200-41612400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:41580000-41592600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:41580600-41603200	Weak transcription	Psoas Muscle	Psoas
13	chr15:41581000-41593200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:41581200-41592200	Weak transcription	Brain Angular Gyrus	brain
15	chr15:41581200-41592200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:41581200-41592400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:41581200-41593000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:41581200-41595200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:41581200-41596000	Weak transcription	Small Intestine	intestine
20	chr15:41581200-41598400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:41581200-41601400	Weak transcription	NHDF-Ad	bronchial
22	chr15:41581200-41602200	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:41581200-41602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:41581200-41604800	Weak transcription	Gastric	stomach
25	chr15:41581200-41605000	Weak transcription	Brain Substantia Nigra	brain
26	chr15:41581200-41607000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:41581200-41609600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:41581200-41623600	Weak transcription	Fetal Brain Male	brain
29	chr15:41581400-41605000	Weak transcription	HMEC	breast
30	chr15:41581400-41610400	Weak transcription	NHLF	lung
31	chr15:41581600-41592200	Weak transcription	NH-A	brain
32	chr15:41581600-41601800	Weak transcription	Fetal Lung	lung
33	chr15:41581600-41623600	Weak transcription	Fetal Kidney	kidney
34	chr15:41581800-41591600	Strong transcription	Fetal Intestine Small	intestine
35	chr15:41581800-41592000	Weak transcription	A549	lung
36	chr15:41582600-41593600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:41583200-41591000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:41583200-41623600	Weak transcription	HSMM	muscle
39	chr15:41583600-41592800	Strong transcription	Fetal Thymus	thymus
40	chr15:41583800-41613000	Weak transcription	Right Ventricle	heart
41	chr15:41584000-41604800	Weak transcription	Aorta	Aorta
42	chr15:41585000-41602800	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:41585400-41593400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:41585600-41591600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:41585600-41592800	Strong transcription	Fetal Intestine Large	intestine
46	chr15:41585600-41623600	Weak transcription	Primary B cells from cord blood	blood
47	chr15:41586000-41593400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:41586200-41592600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:41586200-41593200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:41586200-41595000	Strong transcription	Fetal Muscle Trunk	muscle

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