Variant report

Variant	rs564316489
Chromosome Location	chr6:151096712-151096713
allele	-/AATC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3372927	chr6:151095559-151100857	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3436812	chr6:151096559-151099857	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
2	chr6:151086000-151097800	Weak transcription	Lung	lung
3	chr6:151086000-151098000	Weak transcription	Liver	Liver
4	chr6:151086000-151098000	Weak transcription	Spleen	Spleen
5	chr6:151086000-151121400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:151087600-151109200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:151088200-151121400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:151089000-151097000	Weak transcription	Ovary	ovary
9	chr6:151089000-151098000	Weak transcription	Esophagus	oesophagus
10	chr6:151089000-151105200	Weak transcription	Left Ventricle	heart
11	chr6:151089000-151109800	Weak transcription	Fetal Brain Male	brain
12	chr6:151090200-151098000	Weak transcription	Fetal Kidney	kidney
13	chr6:151091000-151125800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:151091400-151099000	Weak transcription	Placenta	Placenta
15	chr6:151092200-151097800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:151093000-151100400	Strong transcription	Primary B cells from cord blood	blood
17	chr6:151093000-151109400	Weak transcription	Fetal Heart	heart
18	chr6:151094200-151105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:151094800-151096800	Weak transcription	Thymus	Thymus
20	chr6:151094800-151097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:151094800-151098000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:151094800-151098800	Weak transcription	Fetal Stomach	stomach
23	chr6:151095600-151097400	Weak transcription	Adipose Nuclei	Adipose
24	chr6:151095600-151098000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:151095800-151096800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr6:151096000-151097400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:151096000-151100600	Strong transcription	Fetal Thymus	thymus
28	chr6:151096200-151096800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:151096200-151097000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:151096200-151097000	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:151096200-151097400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:151096200-151097400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:151096200-151097400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:151096200-151097400	Enhancers	HMEC	breast
35	chr6:151096400-151097000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:151096600-151096800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:151096600-151096800	Enhancers	Fetal Brain Female	brain
38	chr6:151096600-151096800	Flanking Active TSS	HUVEC	blood vessel
39	chr6:151096600-151097000	Active TSS	Brain Hippocampus Middle	brain
40	chr6:151096600-151097000	Enhancers	Fetal Lung	lung
41	chr6:151096600-151097200	Enhancers	Brain Angular Gyrus	brain
42	chr6:151096600-151097200	Enhancers	Brain Cingulate Gyrus	brain
43	chr6:151096600-151097200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:151096600-151097200	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr6:151096600-151097400	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr6:151096600-151097400	Enhancers	Primary T cells from cord blood	blood
47	chr6:151096600-151097400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:151096600-151097400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr6:151096600-151097400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr6:151096600-151097400	Enhancers	NH-A	brain

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