Variant report

Variant	rs564395226
Chromosome Location	chr14:68601317-68601318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:68601131-68601656	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68570562..68573394-chr14:68599517..68602198,2	MCF-7	breast:
2	chr14:68600662..68602278-chr14:69257760..69259773,2	MCF-7	breast:
3	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:
4	chr14:68600338..68604507-chr14:69260783..69264203,4	MCF-7	breast:
5	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:
6	chr14:68601301..68602871-chr14:68607372..68610107,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258837	TF binding region
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3523718	chr14:68601299-68605697	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:68592400-68602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
4	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68593400-68602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68593400-68603400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:68594200-68604400	Weak transcription	Fetal Stomach	stomach
8	chr14:68596200-68604800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:68598800-68603800	Weak transcription	Adipose Nuclei	Adipose
10	chr14:68599000-68601800	Weak transcription	Fetal Kidney	kidney
11	chr14:68599000-68602000	Weak transcription	Osteobl	bone
12	chr14:68599000-68602200	Weak transcription	NH-A	brain
13	chr14:68599400-68601800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:68599400-68601800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:68599600-68602000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:68599600-68603600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68599600-68603800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:68599800-68601800	Weak transcription	A549	lung
19	chr14:68599800-68603000	Weak transcription	Fetal Muscle Leg	muscle
20	chr14:68599800-68604400	Weak transcription	Ovary	ovary
21	chr14:68600000-68601800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:68600000-68601800	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:68600000-68604200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:68600000-68606200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:68600200-68601800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:68600800-68601800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:68601000-68601800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr14:68601000-68602000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:68601200-68606400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links