Variant report

Variant	rs564406267
Chromosome Location	chr15:76634367-76634368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:76632466-76635489	H1-hESC	embryonic stem cell:	n/a	chr15:76635415-76635425
2	POLR2A	chr15:76633835-76634384	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr15:76634366-76634636	K562	blood:	n/a	n/a
4	E2F6	chr15:76632411-76635905	H1-hESC	embryonic stem cell:	n/a	chr15:76635069-76635076 chr15:76634966-76634975 chr15:76635069-76635076 chr15:76634913-76634922 chr15:76635069-76635076 chr15:76635068-76635077 chr15:76635429-76635439 chr15:76635129-76635143 chr15:76635065-76635077 chr15:76633879-76633888
5	E2F6	chr15:76633333-76635539	H1-hESC	embryonic stem cell:	n/a	chr15:76635069-76635076 chr15:76634966-76634975 chr15:76635069-76635076 chr15:76634913-76634922 chr15:76635069-76635076 chr15:76635068-76635077 chr15:76635429-76635439 chr15:76635129-76635143 chr15:76635065-76635077 chr15:76633879-76633888
6	SUZ12	chr15:76628987-76637136	NT2-D1	testis:	n/a	n/a
7	POLR2A	chr15:76634232-76634388	K562	blood:	n/a	n/a
8	CTBP2	chr15:76631455-76635500	H1-hESC	embryonic stem cell:	n/a	n/a
9	SUZ12	chr15:76629195-76634787	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAX	chr15:76633376-76635494	H1-hESC	embryonic stem cell:	n/a	chr15:76635415-76635425

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76482702..76486394-chr15:76633656..76636389,3	K562	blood:
3	chr15:76481529..76484202-chr15:76633877..76636476,2	K562	blood:
4	chr15:76628671..76632944-chr15:76633969..76642252,10	MCF-7	breast:
5	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
6	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000270036	TF binding region
ENSG00000159556	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000169758	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3396355	chr15:76633922-76636770	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
3	chr15:76630200-76641800	Weak transcription	A549	lung
4	chr15:76630400-76636400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:76630600-76635600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:76631600-76634800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr15:76631600-76636400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:76631800-76634400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr15:76631800-76634400	Strong transcription	K562	blood
10	chr15:76631800-76635600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
11	chr15:76632000-76634400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
14	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
15	chr15:76632000-76634600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr15:76632000-76634600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
17	chr15:76632200-76634400	Enhancers	Lung	lung
18	chr15:76632200-76634600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:76632200-76634600	Flanking Active TSS	Right Ventricle	heart
20	chr15:76632200-76635600	Bivalent Enhancer	Fetal Brain Male	brain
21	chr15:76632400-76634800	Strong transcription	HepG2	liver
22	chr15:76632400-76635600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:76632400-76636000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
24	chr15:76632600-76634800	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr15:76632800-76634600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
26	chr15:76632800-76636000	Bivalent Enhancer	Left Ventricle	heart
27	chr15:76632800-76636200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:76633000-76634400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:76633000-76634800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
30	chr15:76633000-76635400	Enhancers	Gastric	stomach
31	chr15:76633000-76635600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
32	chr15:76633000-76635600	Bivalent Enhancer	Spleen	Spleen
33	chr15:76633000-76635800	Bivalent Enhancer	Fetal Heart	heart
34	chr15:76633200-76634600	Bivalent Enhancer	Placenta	Placenta
35	chr15:76633200-76635000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr15:76633200-76635000	Bivalent Enhancer	Fetal Muscle Leg	muscle
37	chr15:76633200-76635600	Bivalent Enhancer	Liver	Liver
38	chr15:76633200-76635600	Bivalent Enhancer	Fetal Thymus	thymus
39	chr15:76633200-76636000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr15:76633400-76634600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr15:76633400-76634800	Enhancers	Right Atrium	heart
42	chr15:76633400-76635200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:76633400-76635400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
44	chr15:76633400-76635400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
45	chr15:76633400-76635600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
46	chr15:76633400-76636000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:76633400-76636200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:76633400-76636200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:76633400-76637600	Weak transcription	Hela-S3	cervix
50	chr15:76633600-76634400	Bivalent/Poised TSS	Psoas Muscle	Psoas

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