Variant report

Variant	rs564618913
Chromosome Location	chr19:37969956-37969957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65269953..65272188-chr19:37968874..37970374,2	K562	blood:
2	chr19:37957079..37959743-chr19:37967957..37970687,2	K562	blood:

Variant related genes	Relation type
ENSG00000196437	Chromatin interaction
ENSG00000171827	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3505009	chr19:37969321-37970154	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3505010	chr19:37969321-37970154	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv20574	chr19:37969479-37970064	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv579467	chr19:37969499-37972805	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
3	chr19:37961400-37970600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
5	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr19:37962200-37977800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:37962200-37977800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:37962400-37977600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr19:37962400-37979200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:37963000-37970000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
12	chr19:37963200-37976600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
13	chr19:37963200-37981000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr19:37963800-37976400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr19:37963800-37985600	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr19:37964000-37976400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
17	chr19:37964200-37977600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr19:37965800-37971600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:37966200-37970000	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr19:37966200-37970400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr19:37966200-37970400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr19:37966200-37976400	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr19:37966200-37979200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr19:37966200-37984000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr19:37966400-37976800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr19:37966600-37970000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr19:37966600-37976000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
28	chr19:37966600-37976200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
29	chr19:37966600-37977800	ZNF genes & repeats	Fetal Lung	lung
30	chr19:37966600-37977800	ZNF genes & repeats	Dnd41	blood
31	chr19:37966800-37970000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
32	chr19:37966800-37970000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:37966800-37970000	ZNF genes & repeats	Brain Substantia Nigra	brain
34	chr19:37966800-37970200	Strong transcription	NHDF-Ad	bronchial
35	chr19:37966800-37977600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:37967200-37970000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr19:37967200-37970600	Strong transcription	Osteobl	bone
38	chr19:37967400-37970000	Weak transcription	Fetal Heart	heart
39	chr19:37967400-37972600	Weak transcription	NH-A	brain
40	chr19:37967800-37973000	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr19:37968000-37971600	Weak transcription	Psoas Muscle	Psoas
42	chr19:37968000-37971600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr19:37968200-37971000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr19:37968200-37971000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr19:37968200-37971000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr19:37968200-37971000	Weak transcription	Brain Germinal Matrix	brain
47	chr19:37968200-37971000	Weak transcription	Fetal Intestine Small	intestine
48	chr19:37968200-37971000	Weak transcription	Lung	lung
49	chr19:37968200-37971200	Weak transcription	Gastric	stomach
50	chr19:37968200-37971400	Weak transcription	HSMM	muscle

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