Variant report

Variant	rs564970434
Chromosome Location	chr6:131019162-131019163
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:130643524..130644551-chr6:131018759..131019797,15	MCF-7	breast:
2	chr6:130643796..130644450-chr6:131018869..131019419,2	MCF-7	breast:
3	chr6:131019021..131019768-chr6:131080914..131081754,2	MCF-7	breast:
4	chr6:130614261..130615556-chr6:131018820..131019730,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv604664	chr6:131004998-131115817	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522019	chr6:131017953-131019627	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2177879	chr6:131019163-131019164	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131017600-131019200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr6:131017600-131019200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:131017600-131019600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:131017600-131019600	Enhancers	Osteobl	bone
5	chr6:131017800-131019200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:131017800-131019400	Enhancers	NHEK	skin
7	chr6:131017800-131019600	Enhancers	Primary T cells from cord blood	blood
8	chr6:131017800-131019600	Enhancers	NHDF-Ad	bronchial
9	chr6:131018000-131019200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:131018000-131019600	Enhancers	Dnd41	blood
11	chr6:131018000-131020800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:131018200-131019200	Enhancers	HMEC	breast
13	chr6:131018200-131019200	Enhancers	NHLF	lung
14	chr6:131018200-131019400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:131018200-131019600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:131018200-131019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:131018200-131019600	Enhancers	NH-A	brain
18	chr6:131018400-131019200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:131018400-131019200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:131018400-131019200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:131018400-131019600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:131018400-131029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:131018600-131019200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:131018600-131019200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:131018800-131019200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:131019000-131019200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr6:131019000-131019200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:131019000-131019200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:131019000-131019200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:131019000-131019200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:131019000-131019200	Flanking Active TSS	HUVEC	blood vessel
32	chr6:131019000-131019400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:131019000-131019400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:131019000-131019400	Enhancers	Fetal Thymus	thymus
35	chr6:131019000-131019600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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