Variant report

Variant	rs565246673
Chromosome Location	chr11:10530091-10530092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10527749..10530560-chr11:10562124..10563785,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177112	Chromatin interaction
ENSG00000110315	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv972946	chr11:10523147-10534985	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975881	chr11:10529039-10531680	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1044011	chr11:10529353-10564450	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv20718	chr11:10529439-10532011	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
6	esv3394987	chr11:10529788-10530211	Weak transcription Strong transcription	Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	esv3439738	chr11:10529808-10530181	Weak transcription Strong transcription	Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
2	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
3	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
4	chr11:10507800-10544800	Weak transcription	Fetal Kidney	kidney
5	chr11:10511000-10533200	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr11:10512800-10531600	Weak transcription	Stomach Mucosa	stomach
7	chr11:10512800-10540400	Weak transcription	Fetal Lung	lung
8	chr11:10512800-10548600	Weak transcription	Right Ventricle	heart
9	chr11:10513000-10531800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:10513200-10538000	Weak transcription	Left Ventricle	heart
11	chr11:10513400-10536000	Weak transcription	A549	lung
12	chr11:10514600-10531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:10514600-10535600	Weak transcription	HSMM	muscle
14	chr11:10515800-10540600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:10516000-10544000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:10517200-10531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:10520000-10543400	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:10520400-10531600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:10522200-10531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:10522200-10531800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:10522200-10541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:10522400-10532400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:10522400-10535600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:10522400-10537800	Weak transcription	Fetal Intestine Large	intestine
25	chr11:10522400-10540600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:10522400-10546200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:10522400-10560800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:10522800-10540600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:10524200-10537800	Weak transcription	Aorta	Aorta
30	chr11:10524600-10536800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:10524600-10540600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:10524600-10544800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:10525600-10533200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:10525800-10555600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr11:10526000-10532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:10526200-10532000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:10526200-10535400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:10526400-10532600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:10526400-10532600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:10526400-10532600	Weak transcription	Esophagus	oesophagus
41	chr11:10526400-10533200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:10526400-10536000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:10526400-10536200	Weak transcription	NHDF-Ad	bronchial
44	chr11:10526400-10537800	Weak transcription	Pancreas	Pancrea
45	chr11:10526400-10548800	Weak transcription	Spleen	Spleen
46	chr11:10526400-10549000	Weak transcription	Ovary	ovary
47	chr11:10526400-10551800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:10526400-10561600	Weak transcription	Colonic Mucosa	Colon
49	chr11:10526600-10532000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:10526800-10537800	Weak transcription	Fetal Intestine Small	intestine

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