Variant report

Variant	rs565359493
Chromosome Location	chr6:140384687-140384688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:140382710-140384724	SK-N-SH	brain:	n/a	chr6:140383430-140383444

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139692663..139698708-chr6:140381231..140386402,5	MCF-7	breast:
2	chr6:139695333..139696910-chr6:140382949..140384930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236013	TF binding region
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	esv3396540	chr6:140384559-140386457	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140379800-140385200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:140380000-140385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:140380000-140385800	Enhancers	NHDF-Ad	bronchial
4	chr6:140380600-140386400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:140380800-140385000	Enhancers	NHLF	lung
6	chr6:140381000-140385200	Enhancers	HSMM	muscle
7	chr6:140381200-140385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:140381800-140385000	Enhancers	Osteobl	bone
9	chr6:140382400-140384800	Enhancers	Adipose Nuclei	Adipose
10	chr6:140382400-140386400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr6:140382600-140384800	Enhancers	Fetal Heart	heart
12	chr6:140383200-140385600	Weak transcription	Ovary	ovary
13	chr6:140384000-140384800	Enhancers	Hela-S3	cervix
14	chr6:140384200-140385800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:140384200-140391400	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:140384400-140385800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:140384400-140385800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:140384400-140389600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:140384400-140391800	Weak transcription	Fetal Stomach	stomach
20	chr6:140384400-140391800	Weak transcription	Stomach Mucosa	stomach
21	chr6:140384400-140392800	Weak transcription	Aorta	Aorta
22	chr6:140384600-140385600	Weak transcription	Fetal Intestine Large	intestine
23	chr6:140384600-140385600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:140384600-140391200	Weak transcription	Fetal Lung	lung
25	chr6:140384600-140392000	Weak transcription	HSMMtube	muscle
26	chr6:140384600-140392200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:140384600-140394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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