Variant report

Variant	rs565401052
Chromosome Location	chr5:115634706-115634707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115630950..115633524-chr5:115633964..115636710,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv882746	chr5:115566026-115704566	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882747	chr5:115566636-115662510	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017983	chr5:115578765-115713688	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv882748	chr5:115584159-115669950	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv869754	chr5:115634234-115696094	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115613400-115641600	Weak transcription	HSMM	muscle
2	chr5:115625600-115639200	Weak transcription	Fetal Stomach	stomach
3	chr5:115625600-115643000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:115626600-115641600	Weak transcription	Fetal Brain Male	brain
5	chr5:115626800-115642200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:115627200-115635200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:115627800-115639200	Weak transcription	Placenta	Placenta
8	chr5:115628000-115643800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:115628400-115639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:115628400-115641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:115628600-115639400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:115628600-115643400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:115629000-115643800	Weak transcription	HUVEC	blood vessel
14	chr5:115629400-115638200	Weak transcription	Pancreas	Pancrea
15	chr5:115629400-115638400	Weak transcription	Right Ventricle	heart
16	chr5:115631400-115636200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:115631400-115637800	Weak transcription	Fetal Thymus	thymus
18	chr5:115631800-115640600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:115631800-115641800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:115632000-115634800	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr5:115632000-115639200	Weak transcription	Lung	lung
22	chr5:115632000-115643000	Weak transcription	NH-A	brain
23	chr5:115632200-115635600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:115632600-115640400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:115632600-115640600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:115632600-115643400	Weak transcription	Stomach Mucosa	stomach
27	chr5:115632800-115639600	Weak transcription	Brain Angular Gyrus	brain
28	chr5:115632800-115642600	Weak transcription	NHDF-Ad	bronchial
29	chr5:115633000-115635800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:115633200-115634800	Strong transcription	Fetal Heart	heart
31	chr5:115633200-115634800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr5:115633200-115635000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr5:115633200-115640800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:115633400-115634800	ZNF genes & repeats	A549	lung
35	chr5:115633600-115634800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:115633600-115639800	Weak transcription	Spleen	Spleen
37	chr5:115633800-115637600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:115633800-115638200	Weak transcription	HSMMtube	muscle
39	chr5:115633800-115640400	Weak transcription	Esophagus	oesophagus
40	chr5:115634000-115634800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:115634000-115635400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:115634000-115637800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:115634000-115640400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr5:115634200-115634800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:115634200-115634800	Strong transcription	Liver	Liver
46	chr5:115634200-115635400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr5:115634200-115635400	Weak transcription	Aorta	Aorta
48	chr5:115634200-115635400	Weak transcription	Left Ventricle	heart
49	chr5:115634200-115635400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr5:115634200-115635400	Weak transcription	Rectal Smooth Muscle	rectum

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