Variant report

Variant	rs565420961
Chromosome Location	chr9:99900705-99900706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831662	chr9:99752521-99939231	Bivalent Enhancer Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv972432	chr9:99874607-99958095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv973382	chr9:99894731-99916071	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	lncRNA	n/a	inside rSNPs	diseases
4	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3376072	chr9:99899231-99905329	Weak transcription Strong transcription Genic enhancers Enhancers	lncRNA	n/a	inside rSNPs	diseases
6	esv3500611	chr9:99900481-99905279	Weak transcription Strong transcription Enhancers Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99889400-99908200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:99894600-99901400	Weak transcription	Pancreas	Pancrea
3	chr9:99895600-99901000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:99895800-99900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:99895800-99902000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:99897800-99902600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:99897800-99907600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:99898000-99902200	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr9:99898400-99908600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:99898800-99908000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:99900200-99902400	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:99900400-99901000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:99900400-99901600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:99900400-99902800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:99900600-99908800	Strong transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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