Variant report

Variant	rs565474
Chromosome Location	chr9:104181560-104181561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:104159430..104161910-chr9:104180368..104183208,3	MCF-7	breast:
2	chr9:104167280..104171241-chr9:104178855..104183117,5	K562	blood:
3	chr9:104167820..104171241-chr9:104178855..104183117,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF189-2	chr9:104181299-104185086	NONHSAT133730

Variant related genes	Relation type
ENSG00000136870	Chromatin interaction
ENSG00000136897	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs495190	1.00[CHB][hapmap]
rs550915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104172800-104187000	Weak transcription	Left Ventricle	heart
2	chr9:104176400-104185600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:104178000-104182600	Weak transcription	Liver	Liver
4	chr9:104178200-104182200	Weak transcription	Ovary	ovary
5	chr9:104178200-104186800	Weak transcription	Fetal Brain Female	brain
6	chr9:104178400-104183600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:104178400-104187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:104179200-104182400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:104179400-104188800	Enhancers	HepG2	liver
10	chr9:104179800-104182800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:104180200-104181600	Weak transcription	Fetal Intestine Small	intestine
12	chr9:104180200-104181800	Enhancers	Pancreas	Pancrea
13	chr9:104180400-104181800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:104180400-104184600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:104180600-104181600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:104180600-104185800	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:104180800-104181600	Enhancers	NH-A	brain
18	chr9:104180800-104181600	Enhancers	Osteobl	bone
19	chr9:104180800-104181800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:104180800-104181800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:104180800-104181800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:104180800-104181800	Enhancers	HSMM	muscle
23	chr9:104180800-104181800	Enhancers	HSMMtube	muscle
24	chr9:104181000-104181600	Enhancers	HUVEC	blood vessel
25	chr9:104181200-104183600	Weak transcription	Aorta	Aorta
26	chr9:104181200-104184000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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