Variant report

Variant	rs565921
Chromosome Location	chr11:65714925-65714926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65714788..65716960-chr11:65740842..65742416,2	K562	blood:
2	chr11:65686026..65690385-chr11:65711034..65716101,7	MCF-7	breast:
3	chr11:65714644..65718339-chr11:65719708..65722751,5	K562	blood:
4	chr11:65713309..65715025-chr11:65726404..65729230,2	MCF-7	breast:
5	chr11:65707662..65710085-chr11:65713646..65716694,3	MCF-7	breast:
6	chr11:65707413..65709091-chr11:65713572..65715917,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SART1-1	chr11:65714581-65715299	ENSG00000175513

No data

Variant related genes	Relation type
ENSG00000175573	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000175467	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10896065	1.00[MEX][hapmap]
rs11545221	0.87[EUR][1000 genomes]
rs12574568	1.00[CEU][hapmap]
rs12575004	0.87[EUR][1000 genomes]
rs12575514	1.00[EUR][1000 genomes]
rs3825068	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs471203	1.00[MEX][hapmap]
rs477001	1.00[MEX][hapmap]
rs4930169	1.00[MEX][hapmap]
rs561869	1.00[MEX][hapmap]
rs568423	1.00[MEX][hapmap]
rs57968007	1.00[EUR][1000 genomes]
rs58905199	1.00[EUR][1000 genomes]
rs59156593	0.87[EUR][1000 genomes]
rs59768626	1.00[EUR][1000 genomes]
rs601314	1.00[MEX][hapmap]
rs61515492	1.00[EUR][1000 genomes]
rs641323	1.00[MEX][hapmap]
rs6591205	1.00[CEU][hapmap]
rs669300	1.00[MEX][hapmap]
rs67232706	1.00[EUR][1000 genomes]
rs67530871	1.00[EUR][1000 genomes]
rs72928826	0.87[EUR][1000 genomes]
rs72928828	1.00[EUR][1000 genomes]
rs72928830	1.00[EUR][1000 genomes]
rs72928831	0.92[EUR][1000 genomes]
rs72928860	0.87[EUR][1000 genomes]
rs72928879	0.87[EUR][1000 genomes]
rs7940700	1.00[MEX][hapmap]
rs9326362	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65709200-65726000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:65709400-65717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65712400-65716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:65712800-65715400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:65713200-65715400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr11:65713400-65715400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:65713800-65715000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:65713800-65715000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:65713800-65715400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:65713800-65717000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:65714000-65715600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:65714000-65728400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:65714400-65715000	Enhancers	Fetal Muscle Leg	muscle
15	chr11:65714400-65728400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:65714600-65715000	Bivalent/Poised TSS	HepG2	liver
17	chr11:65714600-65715400	Enhancers	Spleen	Spleen
18	chr11:65714600-65719000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:65714800-65715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr11:65714800-65715200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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