Variant report

Variant	rs6591205
Chromosome Location	chr11:65879493-65879494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65848212..65850914-chr11:65878151..65882028,6	MCF-7	breast:
2	chr11:65873309..65876275-chr11:65878383..65880487,3	K562	blood:
3	chr11:65874486..65876275-chr11:65878460..65880487,3	K562	blood:
4	chr11:65878909..65881654-chr11:66029706..66032681,2	K562	blood:
5	chr11:65836537..65838956-chr11:65877283..65879842,2	MCF-7	breast:
6	chr11:65879009..65884313-chr11:65890112..65896035,10	MCF-7	breast:
7	chr11:65874283..65877270-chr11:65878896..65881081,3	MCF-7	breast:
8	chr11:65879258..65881165-chr11:65898106..65900778,2	K562	blood:
9	chr11:65870328..65872289-chr11:65878873..65881229,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10488727	0.80[AFR][1000 genomes]
rs1211863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574568	1.00[CEU][hapmap]
rs17147321	0.80[AFR][1000 genomes]
rs17147347	0.80[AFR][1000 genomes]
rs2452683	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825068	1.00[CEU][hapmap]
rs4930174	1.00[EUR][1000 genomes]
rs4930341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565921	1.00[CEU][hapmap]
rs57287207	1.00[ASN][1000 genomes]
rs57720880	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58107762	0.80[AFR][1000 genomes]
rs58583648	1.00[EUR][1000 genomes]
rs59807152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59827057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60095752	1.00[ASN][1000 genomes]
rs60379964	0.80[AFR][1000 genomes]
rs60415795	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591206	1.00[ASN][1000 genomes]
rs7103495	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72932629	1.00[ASN][1000 genomes]
rs72932698	1.00[ASN][1000 genomes]
rs72934614	1.00[EUR][1000 genomes]
rs72934624	1.00[EUR][1000 genomes]
rs72934632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934642	1.00[EUR][1000 genomes]
rs72934655	1.00[EUR][1000 genomes]
rs72934666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934677	1.00[EUR][1000 genomes]
rs72936625	0.96[EUR][1000 genomes]
rs7950327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326362	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65849200-65879600	Weak transcription	Aorta	Aorta
2	chr11:65851600-65882800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:65863800-65880200	Weak transcription	Fetal Stomach	stomach
4	chr11:65868400-65879600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:65868400-65879600	Weak transcription	Fetal Brain Female	brain
6	chr11:65868400-65879600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:65868600-65879600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:65868600-65879600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:65868800-65886200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:65869000-65882800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr11:65869200-65879600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:65872200-65879600	Weak transcription	Brain Germinal Matrix	brain
14	chr11:65874800-65879600	Weak transcription	Psoas Muscle	Psoas
15	chr11:65874800-65880000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:65874800-65882800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:65875000-65879600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:65875000-65882800	Weak transcription	Fetal Kidney	kidney
19	chr11:65875000-65887200	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:65875200-65879600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:65875400-65879600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:65875400-65879600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:65875400-65879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:65875400-65879600	Enhancers	A549	lung
25	chr11:65875400-65879600	Weak transcription	HepG2	liver
26	chr11:65875800-65880400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr11:65876000-65879600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:65876200-65880000	Enhancers	Fetal Heart	heart
29	chr11:65876400-65879600	Weak transcription	Spleen	Spleen
30	chr11:65876800-65879800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:65876800-65880200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:65876800-65888400	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:65877600-65879600	Weak transcription	Stomach Mucosa	stomach
34	chr11:65877600-65880200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:65877800-65880200	Enhancers	Primary B cells from cord blood	blood
36	chr11:65878000-65883000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:65878200-65880000	Enhancers	Hela-S3	cervix
38	chr11:65878200-65881600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:65878200-65882800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr11:65878200-65882800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr11:65878200-65885600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr11:65878400-65879600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:65878400-65879600	Enhancers	NHDF-Ad	bronchial
44	chr11:65878400-65879800	Enhancers	NHEK	skin
45	chr11:65878400-65880800	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr11:65878400-65881400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr11:65878600-65879600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:65878600-65879600	Enhancers	GM12878-XiMat	blood
49	chr11:65878600-65879600	Enhancers	NHLF	lung
50	chr11:65878800-65879600	Enhancers	Osteobl	bone

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