Variant report

Variant	rs72934666
Chromosome Location	chr11:65894398-65894399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65892293..65894742-chr11:65895992..65899282,4	K562	blood:
2	chr11:65887917..65890389-chr11:65892818..65895430,3	K562	blood:
3	chr11:65882960..65886510-chr11:65888191..65894408,6	K562	blood:
4	chr11:65844532..65851114-chr11:65890610..65896417,9	MCF-7	breast:
5	chr11:65892766..65895679-chr11:65910292..65912034,2	MCF-7	breast:
6	chr11:65894077..65895710-chr11:65900818..65903670,2	K562	blood:
7	chr11:65893056..65895986-chr11:65949360..65951068,2	MCF-7	breast:
8	chr11:65835624..65840174-chr11:65890352..65895526,9	MCF-7	breast:
9	chr11:65879009..65884313-chr11:65890112..65896035,10	MCF-7	breast:
10	chr11:65840242..65841877-chr11:65893961..65895607,2	MCF-7	breast:
11	chr11:65835889..65841300-chr11:65890203..65896604,9	MCF-7	breast:
12	chr11:65892231..65894926-chr11:65897218..65898767,2	MCF-7	breast:
13	chr11:65882300..65885934-chr11:65892908..65896262,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1211863	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2452683	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4930174	1.00[EUR][1000 genomes]
rs4930341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57287207	1.00[ASN][1000 genomes]
rs57720880	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583648	1.00[EUR][1000 genomes]
rs59807152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59827057	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60095752	1.00[ASN][1000 genomes]
rs60415795	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591206	1.00[ASN][1000 genomes]
rs7103495	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72932629	1.00[ASN][1000 genomes]
rs72932698	1.00[ASN][1000 genomes]
rs72934614	1.00[EUR][1000 genomes]
rs72934624	1.00[EUR][1000 genomes]
rs72934632	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934642	1.00[EUR][1000 genomes]
rs72934655	1.00[EUR][1000 genomes]
rs72934668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934677	1.00[EUR][1000 genomes]
rs72936625	0.96[EUR][1000 genomes]
rs7950327	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
2	chr11:65880600-65894400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:65881000-65894600	Weak transcription	Gastric	stomach
4	chr11:65883800-65894400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:65887200-65900400	Weak transcription	Fetal Brain Male	brain
6	chr11:65888400-65909800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:65888600-65894800	Weak transcription	Ovary	ovary
8	chr11:65891200-65894600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:65891200-65895400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:65891400-65894400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:65891400-65894400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:65891400-65894400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:65891400-65895200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:65891400-65895200	Enhancers	Stomach Mucosa	stomach
15	chr11:65891400-65895600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:65891400-65895600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:65891600-65894400	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:65891600-65894600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:65891600-65894600	Enhancers	Hela-S3	cervix
20	chr11:65891800-65894600	Enhancers	Brain Hippocampus Middle	brain
21	chr11:65891800-65895200	Enhancers	Adipose Nuclei	Adipose
22	chr11:65892000-65894600	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:65892000-65895400	Enhancers	Brain Substantia Nigra	brain
24	chr11:65892200-65894800	Enhancers	Small Intestine	intestine
25	chr11:65892400-65894600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr11:65892400-65896000	Flanking Active TSS	GM12878-XiMat	blood
27	chr11:65892800-65894400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:65893000-65895200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:65893000-65895400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:65893200-65894600	Enhancers	Fetal Thymus	thymus
31	chr11:65893200-65895200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:65893200-65895200	Enhancers	Pancreas	Pancrea
33	chr11:65893400-65894400	Enhancers	Brain Cingulate Gyrus	brain
34	chr11:65893400-65894600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:65893400-65895000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:65893400-65895000	Enhancers	HSMM	muscle
37	chr11:65893400-65895000	Enhancers	NH-A	brain
38	chr11:65893400-65895400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:65893400-65895400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:65893400-65895400	Enhancers	Brain Angular Gyrus	brain
41	chr11:65893400-65895400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:65893400-65895600	Enhancers	Fetal Heart	heart
43	chr11:65893600-65894400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:65893600-65894400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:65893600-65894400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:65893600-65894400	Enhancers	K562	blood
47	chr11:65893600-65894600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:65893600-65894600	Enhancers	Fetal Intestine Small	intestine
49	chr11:65893600-65894600	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr11:65893600-65894800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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