Variant report

Variant	rs72934655
Chromosome Location	chr11:65884095-65884096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65879652..65882394-chr11:65882531..65887079,5	K562	blood:
2	chr11:65836821..65841267-chr11:65881295..65888359,12	MCF-7	breast:
3	chr11:65879009..65884313-chr11:65890112..65896035,10	MCF-7	breast:
4	chr11:65873298..65876282-chr11:65883315..65885397,2	K562	blood:
5	chr11:65836711..65839156-chr11:65879952..65887031,7	MCF-7	breast:
6	chr11:65882960..65886510-chr11:65888191..65894408,6	K562	blood:
7	chr11:65882300..65885934-chr11:65892908..65896262,3	K562	blood:

Variant related genes	Relation type
ENSG00000255038	Chromatin interaction
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1211863	0.93[EUR][1000 genomes]
rs2452683	0.96[EUR][1000 genomes]
rs4930174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930341	1.00[EUR][1000 genomes]
rs540943	1.00[EUR][1000 genomes]
rs57720880	0.93[EUR][1000 genomes]
rs58583648	1.00[EUR][1000 genomes]
rs59807152	0.96[EUR][1000 genomes]
rs59827057	0.96[EUR][1000 genomes]
rs60415795	1.00[EUR][1000 genomes]
rs6591205	1.00[EUR][1000 genomes]
rs7103495	0.96[EUR][1000 genomes]
rs72934614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72934636	1.00[EUR][1000 genomes]
rs72934642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934666	1.00[EUR][1000 genomes]
rs72934668	1.00[EUR][1000 genomes]
rs72934673	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72934677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72936625	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7950327	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv3470785	chr11:65884003-65884794	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3470796	chr11:65884003-65884794	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:65868800-65886200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:65875000-65887200	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:65876800-65888400	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:65878200-65885600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:65879200-65886600	Enhancers	Fetal Thymus	thymus
7	chr11:65879400-65884400	Enhancers	Small Intestine	intestine
8	chr11:65879400-65889400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:65879600-65884800	Enhancers	Stomach Mucosa	stomach
10	chr11:65880000-65884600	Weak transcription	Placenta	Placenta
11	chr11:65880000-65885800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:65880000-65885800	Weak transcription	Right Ventricle	heart
13	chr11:65880000-65887000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:65880200-65885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:65880200-65885800	Weak transcription	Esophagus	oesophagus
16	chr11:65880400-65886400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:65880400-65886400	Enhancers	Hela-S3	cervix
18	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
19	chr11:65880600-65886400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:65880600-65894400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:65881000-65884800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:65881000-65886400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:65881000-65886600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:65881000-65886800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:65881000-65892000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:65881000-65894600	Weak transcription	Gastric	stomach
27	chr11:65881200-65886200	Weak transcription	NHLF	lung
28	chr11:65881200-65886400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:65881200-65886400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:65881400-65888600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:65881600-65885600	Weak transcription	NHDF-Ad	bronchial
32	chr11:65881600-65885800	Weak transcription	HMEC	breast
33	chr11:65881600-65886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:65881600-65886400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:65881600-65886400	Weak transcription	Fetal Brain Male	brain
36	chr11:65881600-65893800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr11:65882000-65884800	Enhancers	Fetal Heart	heart
38	chr11:65882000-65885400	Weak transcription	NHEK	skin
39	chr11:65882200-65884400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr11:65882200-65884600	Enhancers	Fetal Intestine Small	intestine
41	chr11:65882400-65884200	Enhancers	Fetal Lung	lung
42	chr11:65882400-65884400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:65882400-65884600	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr11:65882400-65884800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:65882400-65885000	Enhancers	Thymus	Thymus
46	chr11:65882800-65884200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:65882800-65884200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:65882800-65884200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:65882800-65884200	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr11:65882800-65884200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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