Variant report

Variant	rs72934642
Chromosome Location	chr11:65875292-65875293
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65874283..65877270-chr11:65878896..65881081,3	MCF-7	breast:
2	chr11:65874972..65876623-chr11:65881726..65883847,2	K562	blood:
3	chr11:65836931..65839576-chr11:65872860..65876981,3	MCF-7	breast:
4	chr11:65873298..65876282-chr11:65883315..65885397,2	K562	blood:
5	chr11:65869303..65872952-chr11:65875129..65877577,3	K562	blood:
6	chr11:65874486..65876275-chr11:65878460..65880487,3	K562	blood:
7	chr11:65873453..65875969-chr17:47087209..47089476,2	MCF-7	breast:
8	chr11:65819625..65822322-chr11:65874052..65876918,2	MCF-7	breast:
9	chr11:65873309..65876275-chr11:65878383..65880487,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000238752	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1211863	0.93[EUR][1000 genomes]
rs2452683	0.96[EUR][1000 genomes]
rs4930174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4930341	1.00[EUR][1000 genomes]
rs540943	1.00[EUR][1000 genomes]
rs57720880	0.93[EUR][1000 genomes]
rs58583648	1.00[EUR][1000 genomes]
rs59807152	0.96[EUR][1000 genomes]
rs59827057	0.96[EUR][1000 genomes]
rs60415795	1.00[EUR][1000 genomes]
rs6591205	1.00[EUR][1000 genomes]
rs7103495	0.96[EUR][1000 genomes]
rs72934614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934632	1.00[EUR][1000 genomes]
rs72934636	1.00[EUR][1000 genomes]
rs72934655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934666	1.00[EUR][1000 genomes]
rs72934668	1.00[EUR][1000 genomes]
rs72934673	1.00[EUR][1000 genomes]
rs72934677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72936625	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7950327	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65849200-65879600	Weak transcription	Aorta	Aorta
2	chr11:65851600-65882800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:65851800-65878800	Weak transcription	HSMM	muscle
4	chr11:65863800-65880200	Weak transcription	Fetal Stomach	stomach
5	chr11:65868400-65878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:65868400-65879200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:65868400-65879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:65868400-65879400	Weak transcription	Esophagus	oesophagus
9	chr11:65868400-65879400	Weak transcription	Ovary	ovary
10	chr11:65868400-65879600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:65868400-65879600	Weak transcription	Fetal Brain Female	brain
12	chr11:65868400-65879600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:65868600-65879200	Weak transcription	Pancreas	Pancrea
14	chr11:65868600-65879400	Weak transcription	Small Intestine	intestine
15	chr11:65868600-65879600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:65868600-65879600	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:65868800-65886200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:65869000-65878000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:65869000-65882800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:65869200-65876800	Weak transcription	Stomach Mucosa	stomach
22	chr11:65869200-65877000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:65869200-65877400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr11:65869200-65879600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:65869400-65877000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr11:65869800-65879400	Weak transcription	Brain Angular Gyrus	brain
27	chr11:65870000-65875400	Weak transcription	Fetal Thymus	thymus
28	chr11:65870000-65879200	Weak transcription	Thymus	Thymus
29	chr11:65870600-65879000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:65870800-65879400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:65872200-65878800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:65872200-65879600	Weak transcription	Brain Germinal Matrix	brain
33	chr11:65872400-65879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:65872400-65879400	Weak transcription	Adipose Nuclei	Adipose
35	chr11:65873200-65875400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr11:65873200-65875800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:65873200-65875800	Enhancers	Osteobl	bone
38	chr11:65873200-65878800	Genic enhancers	Primary T cells from cord blood	blood
39	chr11:65873400-65875400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:65873400-65876800	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr11:65873400-65877000	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr11:65873600-65876400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:65873600-65876800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:65873800-65876200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:65874000-65875400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:65874000-65875400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr11:65874200-65875400	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:65874200-65875400	Enhancers	HepG2	liver
49	chr11:65874200-65875600	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr11:65874200-65875800	Enhancers	NHDF-Ad	bronchial

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