Variant report

Variant	rs566060041
Chromosome Location	chr7:6747435-6747436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:6745224..6747442-chr7:6767898..6770902,3	MCF-7	breast:
2	chr7:6746161..6747688-chr7:6768318..6771249,2	MCF-7	breast:
3	chr7:6681243..6682856-chr7:6746246..6748831,2	K562	blood:
4	chr7:6729955..6731866-chr7:6746781..6748682,2	MCF-7	breast:
5	chr7:6675962..6678642-chr7:6744432..6748032,4	MCF-7	breast:
6	chr7:6744871..6747873-chr7:6767656..6771321,4	K562	blood:
7	chr2:179315296..179317868-chr7:6745682..6748008,2	MCF-7	breast:
8	chr7:6745463..6748475-chr7:6767656..6769994,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC073343.1-1	chr7:6746704-6748672	NONHSAT119061

No data

Variant related genes	Relation type
ENSG00000205903	Chromatin interaction
ENSG00000187953	Chromatin interaction
ENSG00000180228	Chromatin interaction
ENSG00000204311	Chromatin interaction
ENSG00000265245	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv887440	chr7:6743097-6820508	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv8038	chr7:6744717-6748111	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv887441	chr7:6744957-6919214	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv1819001	chr7:6746810-6785602	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6745000-6747600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr7:6745400-6747600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:6746800-6747600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr7:6746800-6747600	Flanking Active TSS	HepG2	liver
5	chr7:6747000-6768600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:6747200-6747600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:6747200-6747600	Enhancers	Brain Hippocampus Middle	brain
8	chr7:6747200-6747600	Enhancers	K562	blood
9	chr7:6747200-6748800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:6747200-6749600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:6747400-6747600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:6747400-6747600	Enhancers	Primary B cells from cord blood	blood
13	chr7:6747400-6747600	Enhancers	Primary hematopoietic stem cells	blood
14	chr7:6747400-6747600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr7:6747400-6747600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:6747400-6747600	Enhancers	Stomach Smooth Muscle	stomach
17	chr7:6747400-6747600	Enhancers	Dnd41	blood
18	chr7:6747400-6748000	Enhancers	Liver	Liver
19	chr7:6747400-6750600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:6747400-6752600	Weak transcription	HSMMtube	muscle
21	chr7:6747400-6757400	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links