Variant report

Variant	rs566209642
Chromosome Location	chr6:79781906-79781907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:79779097-79782230	K562	blood:	n/a	n/a
2	POLR2A	chr6:79781829-79782008	ProgFib	skin:	n/a	n/a
3	POLR2A	chr6:79781713-79781913	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:79780917..79783210-chr6:79805611..79807685,2	K562	blood:
2	chr6:79780063..79782941-chr6:79943061..79945739,2	K562	blood:
3	chr6:79781654..79785263-chr6:79942636..79944912,3	MCF-7	breast:
4	chr6:79780063..79782220-chr6:79942614..79944561,2	K562	blood:
5	chr6:79721662..79723988-chr6:79780005..79781950,2	K562	blood:

Variant related genes	Relation type
ENSG00000217512	TF binding region
ENSG00000270362	Chromatin interaction
ENSG00000118418	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv981330	chr6:79781902-79785177	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
4	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
6	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
7	chr6:79760600-79785400	Weak transcription	Right Ventricle	heart
8	chr6:79760600-79786800	Weak transcription	Spleen	Spleen
9	chr6:79764000-79782200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:79766400-79782000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:79768600-79786400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:79769800-79785400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:79770400-79784400	Weak transcription	Fetal Brain Male	brain
14	chr6:79770400-79784600	Weak transcription	NHEK	skin
15	chr6:79770400-79784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:79770400-79784800	Weak transcription	HMEC	breast
17	chr6:79770400-79785000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:79770400-79785400	Weak transcription	Thymus	Thymus
19	chr6:79770400-79786600	Weak transcription	Lung	lung
20	chr6:79770600-79782000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:79770600-79782000	Weak transcription	Placenta	Placenta
22	chr6:79770600-79782600	Weak transcription	A549	lung
23	chr6:79770600-79783800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:79770600-79785000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:79770600-79785000	Weak transcription	Hela-S3	cervix
26	chr6:79770600-79785400	Weak transcription	Liver	Liver
27	chr6:79770600-79785800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:79770600-79786000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:79771000-79782800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:79772000-79784800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:79773000-79782200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:79773400-79785400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:79774200-79783400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:79774800-79782200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:79774800-79783400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:79775000-79785400	Weak transcription	Fetal Stomach	stomach
37	chr6:79775200-79785800	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:79775200-79786600	Weak transcription	Pancreas	Pancrea
39	chr6:79775400-79783000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:79775400-79783600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:79775400-79783800	Weak transcription	Fetal Heart	heart
42	chr6:79775400-79785000	Weak transcription	Adipose Nuclei	Adipose
43	chr6:79775400-79786600	Weak transcription	Gastric	stomach
44	chr6:79776000-79782000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:79776800-79782800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:79777000-79786000	Weak transcription	Left Ventricle	heart
47	chr6:79777800-79782800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr6:79777800-79784800	Weak transcription	NH-A	brain
49	chr6:79777800-79785600	Weak transcription	Fetal Thymus	thymus
50	chr6:79778000-79784000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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