Variant report

Variant	rs566457024
Chromosome Location	chr3:17757607-17757608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17752527..17754058-chr3:17756146..17757899,2	K562	blood:
2	chr3:17753992..17758136-chr3:17779432..17782585,3	K562	blood:
3	chr3:17756543..17761197-chr3:17782233..17784855,6	MCF-7	breast:
4	chr3:17748459..17751783-chr3:17756414..17759059,3	K562	blood:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv980010	chr3:17756625-17760941	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17752000-17762000	Weak transcription	Right Ventricle	heart
2	chr3:17753800-17758200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr3:17755000-17757800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
4	chr3:17755200-17757800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr3:17755200-17757800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:17755200-17757800	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr3:17755200-17758000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:17755200-17758000	ZNF genes & repeats	Primary B cells from cord blood	blood
9	chr3:17755200-17759800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:17755200-17771800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:17755400-17757800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:17755400-17758000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:17755400-17758000	ZNF genes & repeats	Dnd41	blood
14	chr3:17755400-17758400	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr3:17755400-17781600	Weak transcription	Pancreas	Pancrea
16	chr3:17755600-17757800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr3:17755600-17757800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
18	chr3:17755600-17757800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:17755600-17757800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
20	chr3:17755600-17758000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr3:17755600-17758000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr3:17755800-17758000	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr3:17756000-17759000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr3:17756200-17757800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:17756200-17758400	Weak transcription	HSMMtube	muscle
26	chr3:17756200-17774600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:17756200-17782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:17756400-17758200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:17756400-17758800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:17756400-17759400	Weak transcription	Right Atrium	heart
31	chr3:17756400-17766800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:17756400-17780600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:17756400-17782800	Weak transcription	Aorta	Aorta
34	chr3:17756600-17761600	Weak transcription	Gastric	stomach
35	chr3:17756600-17767200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr3:17756600-17767400	Weak transcription	Fetal Kidney	kidney
37	chr3:17756600-17767400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr3:17756600-17767600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:17756600-17771800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:17756600-17782200	Weak transcription	HSMM	muscle
41	chr3:17756800-17759200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:17756800-17781600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:17756800-17782200	Weak transcription	NHLF	lung
44	chr3:17757000-17759000	Weak transcription	Psoas Muscle	Psoas
45	chr3:17757000-17766800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:17757000-17767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:17757000-17780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:17757200-17760600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:17757200-17766600	Weak transcription	Liver	Liver
50	chr3:17757200-17767000	Weak transcription	A549	lung

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