Variant report

Variant	rs56654185
Chromosome Location	chr3:100186250-100186251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57755171	1.00[AMR][1000 genomes]
rs57772481	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58548186	1.00[AMR][1000 genomes]
rs58857094	0.98[AFR][1000 genomes]
rs72943211	1.00[AMR][1000 genomes]
rs72943217	1.00[AMR][1000 genomes]
rs72943223	0.93[AFR][1000 genomes]
rs72943229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943234	0.93[AFR][1000 genomes]
rs73860651	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100185400-100189000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100185600-100186600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:100186200-100186400	Weak transcription	Aorta	Aorta
4	chr3:100186200-100187200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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