Variant report

Variant	rs72943223
Chromosome Location	chr3:100181925-100181926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55727921	0.85[AMR][1000 genomes]
rs55937923	1.00[AMR][1000 genomes]
rs56654185	0.93[AFR][1000 genomes]
rs57751524	0.85[AMR][1000 genomes]
rs57772481	0.91[AFR][1000 genomes]
rs57805073	1.00[AMR][1000 genomes]
rs58857094	0.91[AFR][1000 genomes]
rs59103766	1.00[AMR][1000 genomes]
rs72943206	1.00[AMR][1000 genomes]
rs72943219	1.00[AMR][1000 genomes]
rs72943227	1.00[EUR][1000 genomes]
rs72943229	0.95[AFR][1000 genomes]
rs72943234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860607	1.00[EUR][1000 genomes]
rs73860651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73862460	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:100172200-100185200	Weak transcription	Aorta	Aorta
3	chr3:100181800-100182200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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