Variant report

Variant	rs55937923
Chromosome Location	chr3:100160181-100160182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55727921	0.85[AMR][1000 genomes]
rs57751524	0.85[AMR][1000 genomes]
rs57755171	0.96[AFR][1000 genomes]
rs57805073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548186	0.96[AFR][1000 genomes]
rs59103766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941501	0.96[AFR][1000 genomes]
rs72943206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943211	0.92[AFR][1000 genomes]
rs72943217	0.96[AFR][1000 genomes]
rs72943219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943223	1.00[AMR][1000 genomes]
rs72943234	1.00[AMR][1000 genomes]
rs73860651	1.00[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
2	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
3	chr3:100145200-100162400	Weak transcription	HepG2	liver
4	chr3:100146400-100163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:100146400-100177800	Weak transcription	Ovary	ovary
6	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:100149400-100162400	Weak transcription	Fetal Lung	lung
8	chr3:100149400-100171800	Weak transcription	Aorta	Aorta
9	chr3:100158400-100176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:100158800-100161000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:100159000-100160400	Enhancers	Primary T cells from cord blood	blood
12	chr3:100159400-100160200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr3:100159400-100160400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:100159600-100160200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:100159600-100160200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr3:100159600-100160200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:100159600-100160200	Enhancers	Dnd41	blood
18	chr3:100159600-100160400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr3:100159800-100160200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr3:100159800-100160200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr3:100159800-100160200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr3:100159800-100160200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:100159800-100160200	Enhancers	Fetal Thymus	thymus
24	chr3:100160000-100160200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
25	chr3:100160000-100160200	Enhancers	Osteobl	bone

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