Variant report

Variant	rs72943219
Chromosome Location	chr3:100174886-100174887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55727921	0.85[AMR][1000 genomes]
rs55937923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57751524	0.85[AMR][1000 genomes]
rs57755171	0.96[AFR][1000 genomes]
rs57805073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58548186	0.96[AFR][1000 genomes]
rs59103766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941501	0.96[AFR][1000 genomes]
rs72943206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943211	0.92[AFR][1000 genomes]
rs72943217	0.96[AFR][1000 genomes]
rs72943223	1.00[AMR][1000 genomes]
rs72943234	1.00[AMR][1000 genomes]
rs73860651	1.00[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
2	chr3:100146400-100177800	Weak transcription	Ovary	ovary
3	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:100158400-100176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:100163000-100177200	Weak transcription	HepG2	liver
6	chr3:100163400-100176400	Weak transcription	Fetal Lung	lung
7	chr3:100168600-100176200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:100168800-100175600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:100168800-100177800	Weak transcription	Left Ventricle	heart
10	chr3:100169400-100175600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:100169800-100176400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:100170200-100175000	Weak transcription	Fetal Brain Female	brain
13	chr3:100170600-100176400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:100170600-100177400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:100170800-100175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:100170800-100175800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:100170800-100177400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:100172000-100176400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:100172200-100185200	Weak transcription	Aorta	Aorta
20	chr3:100172400-100176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:100172400-100177600	Weak transcription	Fetal Stomach	stomach
22	chr3:100173000-100177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:100173200-100176000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:100174000-100175200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:100174000-100175600	Enhancers	Liver	Liver
26	chr3:100174200-100175000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:100174200-100175400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:100174200-100175400	Enhancers	Fetal Thymus	thymus
29	chr3:100174400-100175000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr3:100174400-100175000	Enhancers	HSMMtube	muscle
31	chr3:100174400-100175600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:100174600-100175000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:100174600-100175000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:100174600-100175000	Strong transcription	Fetal Muscle Leg	muscle
35	chr3:100174600-100175400	Enhancers	Primary hematopoietic stem cells	blood

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