Variant report

Variant rs566556956
Chromosome Location chr5:180262365-180262366
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180259000-180264400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:180259000-180272600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr5:180259400-180263600 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr5:180259400-180271400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr5:180259400-180273600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr5:180259600-180264600 Weak transcription HMEC breast
7 chr5:180259600-180272400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr5:180259600-180272600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr5:180259800-180276800 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr5:180260000-180264000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr5:180260000-180268800 Weak transcription Brain Germinal Matrix brain
12 chr5:180260000-180271400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr5:180260000-180273200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:180260000-180273800 Weak transcription Fetal Kidney kidney
15 chr5:180260000-180274400 Weak transcription Muscle Satellite Cultured Cells --
16 chr5:180260000-180274400 Weak transcription NHDF-Ad bronchial
17 chr5:180260000-180276200 Weak transcription Stomach Mucosa stomach
18 chr5:180260200-180263600 Weak transcription HepG2 liver
19 chr5:180260200-180264200 Weak transcription K562 blood
20 chr5:180260200-180267400 Weak transcription Fetal Heart heart
21 chr5:180260400-180263000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
22 chr5:180260600-180262600 Weak transcription Fetal Brain Male brain
23 chr5:180260800-180262400 Genic enhancers Adipose Nuclei Adipose
24 chr5:180261000-180262400 Genic enhancers Primary B cells from peripheral blood blood
25 chr5:180261000-180262400 Genic enhancers Primary T cells fromperipheralblood blood
26 chr5:180261000-180264400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr5:180261000-180264800 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr5:180261000-180265000 Strong transcription Primary hematopoietic stem cells short term culture blood
29 chr5:180261000-180265400 Strong transcription Primary monocytes fromperipheralblood blood
30 chr5:180261000-180265400 Strong transcription Primary B cells from cord blood blood
31 chr5:180261000-180265400 Strong transcription Fetal Muscle Trunk muscle
32 chr5:180261000-180265400 Strong transcription Left Ventricle heart
33 chr5:180261000-180265400 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr5:180261200-180262400 Genic enhancers Brain Substantia Nigra brain
35 chr5:180261200-180262600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
36 chr5:180261200-180264000 Strong transcription Fetal Muscle Leg muscle
37 chr5:180261200-180264600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr5:180261200-180264600 Strong transcription Primary hematopoietic stem cells blood
39 chr5:180261200-180265000 Strong transcription Duodenum Mucosa Duodenum
40 chr5:180261200-180265200 Strong transcription Brain Anterior Caudate brain
41 chr5:180261200-180265200 Strong transcription Brain Inferior Temporal Lobe brain
42 chr5:180261200-180265200 Strong transcription Placenta Placenta
43 chr5:180261200-180265400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr5:180261200-180265400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr5:180261200-180265400 Strong transcription Liver Liver
46 chr5:180261200-180265600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr5:180261200-180265600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr5:180261400-180262400 Genic enhancers Primary T helper cells PMA-I stimulated --
49 chr5:180261400-180262400 Genic enhancers Primary T helper cells fromperipheralblood blood
50 chr5:180261400-180262400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood

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