The 2.0 version of rSNPBase

Variant report

Variant rs56658018
Chromosome Location chr5:58392829-58392830
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58387800-58394600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr5:58388600-58394600 Weak transcription Stomach Mucosa stomach
3 chr5:58389000-58394600 Weak transcription HSMM muscle
4 chr5:58389200-58394600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr5:58389400-58394200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:58389600-58393000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr5:58389600-58394000 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr5:58389600-58394200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:58389600-58394600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr5:58389800-58394000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
11 chr5:58389800-58394200 Weak transcription NHEK skin
12 chr5:58389800-58394800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr5:58389800-58395000 Weak transcription HepG2 liver
14 chr5:58390800-58396200 Enhancers Fetal Intestine Large intestine
15 chr5:58391000-58395000 Weak transcription Primary T cells from cord blood blood
16 chr5:58391600-58393800 Enhancers Colon Smooth Muscle Colon
17 chr5:58391600-58394000 Enhancers Hela-S3 cervix
18 chr5:58391800-58393000 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr5:58391800-58393000 Weak transcription Osteobl bone
20 chr5:58391800-58398800 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr5:58392000-58393000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:58392000-58393600 Enhancers Duodenum Smooth Muscle Duodenum
23 chr5:58392000-58393600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr5:58392000-58393800 Enhancers Fetal Lung lung
25 chr5:58392000-58394600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr5:58392000-58394600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr5:58392000-58395000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr5:58392000-58398400 Weak transcription Left Ventricle heart
29 chr5:58392000-58400400 Weak transcription Duodenum Mucosa Duodenum
30 chr5:58392000-58400600 Weak transcription Stomach Smooth Muscle stomach
31 chr5:58392400-58395400 Weak transcription Psoas Muscle Psoas
32 chr5:58392400-58399200 Weak transcription Small Intestine intestine
33 chr5:58392400-58400400 Weak transcription Fetal Stomach stomach
34 chr5:58392600-58393600 Flanking Active TSS A549 lung
35 chr5:58392600-58393800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr5:58392800-58393600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr5:58392800-58393800 Enhancers Rectal Smooth Muscle rectum
38 chr5:58392800-58394000 Enhancers Muscle Satellite Cultured Cells --
39 chr5:58392800-58394000 Enhancers NHLF lung
40 chr5:58392800-58396400 Enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015