Variant report

Variant	rs73093348
Chromosome Location	chr5:58378981-58378982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11957770	1.00[EUR][1000 genomes]
rs13360359	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16889175	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56658018	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58202935	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58830206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60527700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60741550	0.81[ASN][1000 genomes]
rs60790143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60836618	0.81[ASN][1000 genomes]
rs60900708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61288498	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6869400	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73093337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093351	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58376400-58388200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:58376400-58389200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:58376400-58390400	Weak transcription	Hela-S3	cervix
4	chr5:58376600-58386200	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:58376600-58387000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:58376800-58385800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:58378000-58380000	Genic enhancers	A549	lung
8	chr5:58378200-58391800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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