Variant report

Variant	rs56658570
Chromosome Location	chr9:93162034-93162035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs58174490	0.84[ASN][1000 genomes]
rs58620417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58629287	0.83[AMR][1000 genomes]
rs60697894	0.84[ASN][1000 genomes]
rs72741392	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741400	0.83[AMR][1000 genomes]
rs72741402	0.83[AMR][1000 genomes]
rs72742912	0.83[AMR][1000 genomes]
rs72742914	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742920	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742922	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742924	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742929	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742932	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742933	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72742937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93158400-93162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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