Variant report

Variant	rs56659656
Chromosome Location	chr12:20893752-20893753
allele	-/AT/ATAT/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10770714	0.81[AMR][1000 genomes]
rs10770715	0.81[AMR][1000 genomes]
rs10841604	0.80[AMR][1000 genomes]
rs11045426	0.83[AMR][1000 genomes]
rs11045428	0.83[AMR][1000 genomes]
rs11045429	0.83[AMR][1000 genomes]
rs11045430	0.83[AMR][1000 genomes]
rs11045432	0.83[AMR][1000 genomes]
rs11045435	0.83[AMR][1000 genomes]
rs12368368	0.81[AMR][1000 genomes]
rs12368841	0.82[AMR][1000 genomes]
rs1399939	0.81[AMR][1000 genomes]
rs1399940	0.81[AMR][1000 genomes]
rs1515765	0.83[AMR][1000 genomes]
rs1554145	0.83[AMR][1000 genomes]
rs1554146	0.83[AMR][1000 genomes]
rs1554147	0.83[AMR][1000 genomes]
rs1554148	0.83[AMR][1000 genomes]
rs1554149	0.83[AMR][1000 genomes]
rs1554151	0.83[AMR][1000 genomes]
rs1554152	0.83[AMR][1000 genomes]
rs1554153	0.83[AMR][1000 genomes]
rs1554154	0.80[AMR][1000 genomes]
rs17326431	0.83[AMR][1000 genomes]
rs17326468	0.83[AMR][1000 genomes]
rs1829001	0.80[AMR][1000 genomes]
rs1829003	0.82[AMR][1000 genomes]
rs2138332	0.81[AMR][1000 genomes]
rs2271656	0.81[AMR][1000 genomes]
rs2417863	0.80[AMR][1000 genomes]
rs2417864	0.82[AMR][1000 genomes]
rs4468396	0.83[AMR][1000 genomes]
rs4531518	0.83[AMR][1000 genomes]
rs4581503	0.83[AMR][1000 genomes]
rs4762772	0.80[AMR][1000 genomes]
rs56767862	0.83[AMR][1000 genomes]
rs6487137	0.80[AMR][1000 genomes]
rs7137980	0.82[AMR][1000 genomes]
rs7311073	0.83[AMR][1000 genomes]
rs7311098	0.81[AMR][1000 genomes]
rs7311533	0.83[AMR][1000 genomes]
rs7969555	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043890	chr12:20659151-21309993	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv541410	chr12:20659151-21309993	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1054997	chr12:20682009-21292602	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv557704	chr12:20842041-20893980	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3391629	chr12:20866256-20908722	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1039951	chr12:20880417-20941238	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv17347	chr12:20892854-21029179	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20892800-20922200	Weak transcription	Aorta	Aorta

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