Variant report

Variant	rs56663878
Chromosome Location	chr5:100596818-100596819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10043874	0.84[AFR][1000 genomes]
rs11950545	0.90[EUR][1000 genomes]
rs11950589	0.90[EUR][1000 genomes]
rs11953880	0.90[EUR][1000 genomes]
rs11954317	0.90[EUR][1000 genomes]
rs1585353	0.90[EUR][1000 genomes]
rs1585354	0.90[EUR][1000 genomes]
rs17135627	0.90[EUR][1000 genomes]
rs17135637	0.90[EUR][1000 genomes]
rs17135652	0.90[EUR][1000 genomes]
rs1874171	0.90[EUR][1000 genomes]
rs2199187	0.90[EUR][1000 genomes]
rs2199188	0.90[EUR][1000 genomes]
rs28520673	0.90[EUR][1000 genomes]
rs34260639	0.90[EUR][1000 genomes]
rs41435454	0.90[EUR][1000 genomes]
rs41508844	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56224357	0.90[EUR][1000 genomes]
rs57173603	0.90[EUR][1000 genomes]
rs58107650	0.90[EUR][1000 genomes]
rs59761964	0.90[EUR][1000 genomes]
rs60091140	0.90[EUR][1000 genomes]
rs73163043	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165903	0.90[EUR][1000 genomes]
rs73165906	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73165909	0.90[EUR][1000 genomes]
rs73165911	0.90[EUR][1000 genomes]
rs73165913	0.90[EUR][1000 genomes]
rs73165917	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73165918	0.90[EUR][1000 genomes]
rs73165919	0.90[EUR][1000 genomes]
rs73165921	0.90[EUR][1000 genomes]
rs73165923	0.90[EUR][1000 genomes]
rs73165924	0.90[EUR][1000 genomes]
rs73165925	0.90[EUR][1000 genomes]
rs73165927	0.90[EUR][1000 genomes]
rs73170051	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777730	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777757	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73777782	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73780710	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73780740	0.90[EUR][1000 genomes]
rs73780751	0.90[EUR][1000 genomes]
rs7444022	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528811	chr5:100424081-101218087	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1032191	chr5:100455166-100852106	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv516292	chr5:100490972-100925684	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2758007	chr5:100507726-100760722	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759360	chr5:100507726-100760722	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2757125	chr5:100542114-100656591	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv35075	chr5:100542852-100656532	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2753053	chr5:100543101-100636101	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv13171	chr5:100551009-100649385	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv818365	chr5:100552450-100635105	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv882479	chr5:100587626-100941372	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3384356	chr5:100591602-100614324	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100596400-100597000	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr5:100596400-100598000	Enhancers	Fetal Intestine Large	intestine
3	chr5:100596800-100597200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
4	chr5:100596800-100597200	Enhancers	A549	lung

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