Variant report

Variant	rs73777757
Chromosome Location	chr5:100699168-100699169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11950545	1.00[EUR][1000 genomes]
rs11950589	1.00[EUR][1000 genomes]
rs11953880	1.00[EUR][1000 genomes]
rs11954317	1.00[EUR][1000 genomes]
rs1585353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585354	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135627	1.00[EUR][1000 genomes]
rs17135637	1.00[EUR][1000 genomes]
rs17135652	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874171	1.00[EUR][1000 genomes]
rs2199187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28520673	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34260639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41435454	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41508844	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56224357	1.00[EUR][1000 genomes]
rs56663878	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57173603	1.00[EUR][1000 genomes]
rs58107650	1.00[EUR][1000 genomes]
rs59761964	1.00[EUR][1000 genomes]
rs60091140	1.00[EUR][1000 genomes]
rs73163043	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73165903	1.00[EUR][1000 genomes]
rs73165906	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165909	1.00[EUR][1000 genomes]
rs73165911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165913	1.00[EUR][1000 genomes]
rs73165917	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73165919	1.00[EUR][1000 genomes]
rs73165921	1.00[EUR][1000 genomes]
rs73165923	1.00[EUR][1000 genomes]
rs73165924	1.00[EUR][1000 genomes]
rs73165925	1.00[EUR][1000 genomes]
rs73165927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170051	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73777730	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73777782	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73780710	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73780740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73780751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7444022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv462320	chr5:100247554-100775607	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599176	chr5:100247554-100775607	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv528811	chr5:100424081-101218087	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1032191	chr5:100455166-100852106	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv516292	chr5:100490972-100925684	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2758007	chr5:100507726-100760722	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2759360	chr5:100507726-100760722	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv882479	chr5:100587626-100941372	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv882481	chr5:100599227-100759281	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv599179	chr5:100609923-100826324	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv882485	chr5:100619084-100752325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2753518	chr5:100633738-100756873	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv2755981	chr5:100633738-100830395	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv882489	chr5:100640721-100710312	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv882490	chr5:100640721-100826324	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv2753012	chr5:100695487-100756873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100696000-100699400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:100697600-100699800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:100699000-100700000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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