Variant report
| Variant | rs56669316 |
|---|---|
| Chromosome Location | chr2:153157459-153157460 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11683697 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11695401 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13023790 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1344837 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1987371 | 0.83[ASN][1000 genomes] |
| rs2004544 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2345884 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2881241 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664097 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664098 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664565 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664566 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6433968 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6433969 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6710870 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6747548 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6754630 | 0.84[EUR][1000 genomes] |
| rs6755112 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs67688205 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72860473 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72860485 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73002881 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875288 | chr2:152716628-153183646 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv875289 | chr2:152720030-153183646 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | esv3693434 | chr2:152998467-153208713 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv437299 | chr2:153157043-153170391 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:153155800-153161000 | Weak transcription | HMEC | breast |
