Variant report
| Variant | rs73002881 |
|---|---|
| Chromosome Location | chr2:153188492-153188493 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157827 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11683697 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11695401 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13023790 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1344837 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1987371 | 0.83[ASN][1000 genomes] |
| rs2004544 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2345884 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2881241 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664097 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664098 | 0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664565 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4664566 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56669316 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6433968 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6433969 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6710870 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6747548 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6754630 | 0.89[EUR][1000 genomes] |
| rs6755112 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs67688205 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72860473 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72860485 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3693434 | chr2:152998467-153208713 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv834419 | chr2:153179420-153381476 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:153187000-153191200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
