Variant report

Variant	rs56669650
Chromosome Location	chr13:110621405-110621406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59230671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61003451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61602918	0.96[AFR][1000 genomes]
rs73615223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615233	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615235	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110620800-110622000	Enhancers	Left Ventricle	heart
2	chr13:110620800-110622000	Enhancers	Right Ventricle	heart
3	chr13:110621000-110621800	Enhancers	Fetal Heart	heart
4	chr13:110621200-110621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:110621200-110621800	Enhancers	Adipose Nuclei	Adipose
6	chr13:110621400-110621600	Enhancers	Pancreas	Pancrea
7	chr13:110621400-110621600	Enhancers	NHLF	lung
8	chr13:110621400-110621800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:110621400-110623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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