Variant report

Variant	rs59230671
Chromosome Location	chr13:110607930-110607931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56669650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61003451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61602918	0.89[AFR][1000 genomes]
rs73615223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110602000-110613600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110602400-110608200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110606800-110609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:110607600-110608600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:110607600-110608600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:110607600-110608800	Enhancers	Adipose Nuclei	Adipose
7	chr13:110607600-110609000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:110607600-110609000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:110607800-110608600	Enhancers	Fetal Muscle Leg	muscle
10	chr13:110607800-110608600	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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