Variant report

Variant	rs56674029
Chromosome Location	chr3:143277553-143277554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34566000	1.00[ASN][1000 genomes]
rs3951555	1.00[ASN][1000 genomes]
rs4025523	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58337567	0.88[EUR][1000 genomes]
rs6762682	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:143257200-143277800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:143262000-143279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:143265000-143277600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:143270600-143304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:143273800-143279800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:143276800-143277600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
8	chr3:143276800-143277600	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr3:143277000-143277600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
10	chr3:143277000-143277600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:143277000-143277600	ZNF genes & repeats	Dnd41	blood
12	chr3:143277200-143277600	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr3:143277200-143277600	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr3:143277200-143277600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr3:143277400-143278000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr3:143277400-143279600	Weak transcription	Gastric	stomach
17	chr3:143277400-143282400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:143277400-143292400	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:143277400-143301200	Weak transcription	Esophagus	oesophagus
20	chr3:143277400-143303600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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