Variant report

Variant	rs6762682
Chromosome Location	chr3:143269569-143269570
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143266899..143271350-chr3:143271454..143273544,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16853772	1.00[CEU][hapmap]
rs34566000	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3951555	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4025523	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56674029	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58337567	1.00[EUR][1000 genomes]
rs7633585	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143248400-143276800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:143250200-143269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:143255600-143276800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:143255800-143271800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:143256000-143305600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:143256400-143270000	Weak transcription	Spleen	Spleen
7	chr3:143256600-143275000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:143256800-143269800	Weak transcription	Esophagus	oesophagus
9	chr3:143256800-143277000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:143257200-143277800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:143257600-143270000	Weak transcription	Ovary	ovary
12	chr3:143258400-143269800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr3:143258400-143271400	Weak transcription	Fetal Stomach	stomach
14	chr3:143258600-143270200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:143261200-143270400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:143262000-143279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:143262800-143269800	Weak transcription	Brain Anterior Caudate	brain
18	chr3:143263200-143277000	Weak transcription	Gastric	stomach
19	chr3:143263800-143272200	Strong transcription	Primary T cells from cord blood	blood
20	chr3:143264000-143272000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:143264200-143269800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr3:143264400-143270200	Weak transcription	Dnd41	blood
23	chr3:143264400-143270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:143265000-143277600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:143265600-143272200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:143265800-143274200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:143266200-143269600	Weak transcription	Liver	Liver
28	chr3:143266800-143270200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:143266800-143270800	Strong transcription	Brain Hippocampus Middle	brain
30	chr3:143267600-143277000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:143267800-143273000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:143268000-143269600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:143268000-143270600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr3:143268000-143270800	Strong transcription	Brain Substantia Nigra	brain
35	chr3:143268600-143269600	Weak transcription	Fetal Lung	lung
36	chr3:143268600-143271000	Weak transcription	Brain Angular Gyrus	brain
37	chr3:143268800-143269600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr3:143269000-143269600	Weak transcription	Fetal Thymus	thymus
39	chr3:143269000-143270400	Strong transcription	Adipose Nuclei	Adipose
40	chr3:143269000-143270600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:143269000-143270800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:143269200-143271800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:143269400-143269800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
44	chr3:143269400-143270400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr3:143269400-143270600	Strong transcription	Primary B cells from cord blood	blood
46	chr3:143269400-143270600	Strong transcription	Fetal Muscle Leg	muscle
47	chr3:143269400-143271200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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