Variant report

Variant	rs566814228
Chromosome Location	chr11:56085775-56085776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:56085745-56085795	HAEpiC	amniotic membrane:	n/a
2	chr11:56085745-56085795	LNCaP	prostate:	n/a
3	chr11:56085745-56085795	HL-60	blood:	n/a
4	chr11:56085745-56085795	HNPCEpiC	eye:	n/a
5	chr11:56085745-56085795	U87	brain:	n/a
6	chr11:56085745-56085795	GM12891	blood:	n/a
7	chr11:56085745-56085795	GM12878	blood:	n/a
8	chr11:56085745-56085795	BE2_C	brain:	n/a
9	chr11:56085745-56085795	HCT-116	colon:	n/a
10	chr11:56085745-56085795	AG09319	gingival:	n/a
11	chr11:56085745-56085795	RPTEC	kidney:	n/a
12	chr11:56085745-56085795	AoSMC	blood vessel:	n/a
13	chr11:56085745-56085795	HRPEpiC	eye:	n/a
14	chr11:56085745-56085795	NT2-D1	testis:	n/a
15	chr11:56085745-56085795	HCF	heart:	n/a
16	chr11:56085745-56085795	MCF10A-Er-Src	breast:	n/a
17	chr11:56085745-56085795	SKMC	muscle:	n/a
18	chr11:56085745-56085795	K562	blood:	n/a
19	chr11:56085745-56085795	AG04449	skin:	fetal
20	chr11:56085745-56085795	MCF-7	breast:	n/a
21	chr11:56085745-56085795	HMEC	breast:	n/a
22	chr11:56085745-56085795	AG09309	skin:	n/a
23	chr11:56085745-56085795	AG04450	lung:	fetal
24	chr11:56085745-56085795	SK-N-MC	brain:	n/a
25	chr11:56085745-56085795	SAEC	small airway:	n/a
26	chr11:56085745-56085795	NH-A	brain:	n/a
27	chr11:56085745-56085795	CMK	blood:	n/a
28	chr11:56085745-56085795	HCM	heart:	n/a
29	chr11:56085745-56085795	NB4	blood:	n/a
30	chr11:56085745-56085795	HIPEpiC	eye:	n/a
31	chr11:56085745-56085795	PrEC	prostate:	n/a
32	chr11:56085745-56085795	HepG2	liver:	n/a
33	chr11:56085745-56085795	BJ	skin:	n/a
34	chr11:56085745-56085795	GM06990	blood:	n/a
35	chr11:56085745-56085795	IMR90	lung:	fetal
36	chr11:56085745-56085795	Hepatocyte	liver:	n/a
37	chr11:56085745-56085795	PANC-1	pancreas:	n/a
38	chr11:56085745-56085795	T-47D	breast:	n/a
39	chr11:56085745-56085795	HPAEpiC	pulmonary alveolar:	n/a
40	chr11:56085745-56085795	HUVEC	blood vessel:	n/a
41	chr11:56085745-56085795	HRE	kidney:	n/a
42	chr11:56085745-56085795	H1-hESC	embryonic stem cell:	embryo
43	chr11:56085745-56085795	NHBE	bronchial:	n/a
44	chr11:56085745-56085795	NHDF-neo	bronchial:	n/a
45	chr11:56085745-56085795	HEK293	kidney:	embryo
46	chr11:56085745-56085795	Hela-S3	cervix:	n/a
47	chr11:56085745-56085795	HCPEpiC	choroid plexus:	n/a
48	chr11:56085745-56085795	GM12892	blood:	n/a
49	chr11:56085745-56085795	HEEpiC	esophagus:	n/a
50	chr11:56085745-56085795	PFSK-1	brain:	n/a

No data

Variant related genes	Relation type
OR8K3	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv555096	chr11:56084444-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv555097	chr11:56084611-56235061	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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