Variant report

Variant	rs56683736
Chromosome Location	chr12:9411018-9411019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLRG1-3	chr12:9406532-9411248	l_599_chr12:9406531-9439851_testes

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10492111	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609041	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609486	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11609858	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11611480	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11611658	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11611720	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11615838	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918244	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918255	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918259	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918261	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918262	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918263	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918265	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918266	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918268	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34008607	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57217072	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57399520	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57993749	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58365160	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58751272	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59273791	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59417188	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59502820	0.83[ASN][1000 genomes]
rs60338254	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61240790	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61283342	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61614407	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234404	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234406	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234422	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234477	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234481	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234482	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234494	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73234500	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236904	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236908	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236909	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236910	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236911	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236914	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236921	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236922	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73236927	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7975722	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv527404	chr12:9250601-9435244	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
8	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
10	nsv1048917	chr12:9393282-9436132	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv916832	chr12:9397450-9693952	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv898739	chr12:9398365-9435244	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9393600-9411400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:9409000-9413200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:9409200-9412000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:9410800-9415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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