Variant report

Variant	rs59502820
Chromosome Location	chr12:9393721-9393722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10492111	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11609041	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11609486	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11609858	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11611480	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11611658	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11611720	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11615838	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918244	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918255	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918259	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918261	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918262	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918263	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918265	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918266	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16918268	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56683736	0.83[ASN][1000 genomes]
rs57217072	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57399520	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57993749	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58365160	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58751272	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59273791	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59417188	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60338254	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61240790	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61283342	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61614407	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234404	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234406	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234422	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73234477	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234481	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234482	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234494	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73234500	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236904	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236908	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236909	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236910	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236911	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236914	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236921	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236922	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73236927	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7975722	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv527404	chr12:9250601-9435244	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
6	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
8	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
10	nsv1048917	chr12:9393282-9436132	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9392600-9393800	Active TSS	Adipose Nuclei	Adipose
2	chr12:9392600-9393800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr12:9392600-9393800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr12:9392600-9393800	Active TSS	Left Ventricle	heart
5	chr12:9392600-9393800	Active TSS	Right Atrium	heart
6	chr12:9392600-9393800	Active TSS	Stomach Smooth Muscle	stomach
7	chr12:9392600-9394000	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr12:9392600-9394200	Active TSS	Brain Cingulate Gyrus	brain
9	chr12:9392800-9393800	Active TSS	Brain Hippocampus Middle	brain
10	chr12:9392800-9393800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:9393200-9395400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:9393200-9395800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:9393200-9396800	Weak transcription	Psoas Muscle	Psoas
14	chr12:9393200-9397400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:9393200-9397400	Weak transcription	Pancreas	Pancrea
16	chr12:9393200-9397400	Weak transcription	Right Ventricle	heart
17	chr12:9393400-9393800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:9393400-9393800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr12:9393400-9393800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr12:9393400-9393800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr12:9393400-9393800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr12:9393400-9393800	Flanking Active TSS	Liver	Liver
23	chr12:9393400-9393800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
24	chr12:9393400-9394000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr12:9393400-9394000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr12:9393400-9397400	Weak transcription	HMEC	breast
27	chr12:9393400-9398200	Enhancers	HepG2	liver
28	chr12:9393600-9393800	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr12:9393600-9393800	Active TSS	Brain Substantia Nigra	brain
30	chr12:9393600-9393800	Flanking Active TSS	Fetal Lung	lung
31	chr12:9393600-9394000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr12:9393600-9394000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr12:9393600-9395000	Enhancers	Brain Angular Gyrus	brain
34	chr12:9393600-9408200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr12:9393600-9411400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links