Variant report

Variant	rs566874935
Chromosome Location	chr17:15612349-15612350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr17:15612211-15612593	K562	blood:	n/a	n/a

Variant related genes	Relation type
UBE2SP1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv907705	chr17:15611495-15717546	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15603400-15616400	Weak transcription	Pancreas	Pancrea
2	chr17:15603600-15619200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:15604200-15623800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:15604400-15623800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:15604600-15612400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:15604800-15623400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:15607000-15623400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr17:15607600-15612400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr17:15607600-15612400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:15607600-15612400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr17:15607600-15612400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr17:15607600-15612400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr17:15607600-15612400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr17:15608200-15612400	ZNF genes & repeats	Primary B cells from cord blood	blood
15	chr17:15608200-15612400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr17:15608200-15612400	Strong transcription	Osteobl	bone
17	chr17:15608200-15612600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:15608200-15621200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:15608400-15612400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:15608400-15612400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr17:15608400-15613400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr17:15608400-15616400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:15608400-15623800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr17:15608400-15623800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:15608600-15612400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:15608600-15613000	ZNF genes & repeats	Liver	Liver
27	chr17:15608600-15618200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr17:15609000-15612400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
29	chr17:15609000-15612400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr17:15609000-15612400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr17:15609000-15612400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr17:15609000-15612400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
33	chr17:15609000-15612400	Strong transcription	Placenta	Placenta
34	chr17:15609200-15612400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
35	chr17:15609200-15612400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr17:15609200-15612400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr17:15609200-15612400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr17:15609200-15612400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr17:15609200-15612400	ZNF genes & repeats	Fetal Intestine Large	intestine
40	chr17:15609200-15612400	ZNF genes & repeats	Fetal Kidney	kidney
41	chr17:15609200-15612400	ZNF genes & repeats	Fetal Lung	lung
42	chr17:15609200-15612400	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr17:15609200-15612400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr17:15609200-15612400	ZNF genes & repeats	A549	lung
45	chr17:15609200-15612400	ZNF genes & repeats	HSMMtube	muscle
46	chr17:15609200-15612400	ZNF genes & repeats	HUVEC	blood vessel
47	chr17:15609200-15612600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr17:15609400-15612400	Strong transcription	Brain Substantia Nigra	brain
49	chr17:15609400-15612400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
50	chr17:15609400-15612400	Strong transcription	Placenta Amnion	Placenta Amnion

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