Variant report

Variant	rs56687737
Chromosome Location	chr2:21114138-21114139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57732174	0.83[AFR][1000 genomes]
rs59362958	0.86[AFR][1000 genomes]
rs73921321	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21112000-21114800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:21112400-21115200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21112800-21114400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:21112800-21116000	Weak transcription	Esophagus	oesophagus
5	chr2:21113200-21116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:21113200-21116600	Weak transcription	HMEC	breast
7	chr2:21113400-21115400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:21113400-21116200	Weak transcription	NHEK	skin
9	chr2:21114000-21114200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:21114000-21114400	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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