Variant report

Variant	rs73921321
Chromosome Location	chr2:21112586-21112587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10175547	1.00[AMR][1000 genomes]
rs55867127	1.00[AMR][1000 genomes]
rs56687737	0.86[AFR][1000 genomes]
rs57732174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59362958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73918050	1.00[AMR][1000 genomes]
rs73919811	1.00[AMR][1000 genomes]
rs73920524	1.00[AMR][1000 genomes]
rs73921323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921324	1.00[AMR][1000 genomes]
rs73921325	1.00[AMR][1000 genomes]
rs73921329	1.00[AMR][1000 genomes]
rs73921338	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455841	chr2:21086693-21135577	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv581168	chr2:21086693-21135577	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21111800-21112800	Enhancers	Esophagus	oesophagus
2	chr2:21112000-21113400	Enhancers	NHEK	skin
3	chr2:21112000-21114800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:21112200-21113000	Enhancers	Fetal Thymus	thymus
5	chr2:21112200-21113200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:21112200-21113200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:21112200-21113200	Enhancers	HMEC	breast
8	chr2:21112200-21113400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:21112400-21112600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:21112400-21115200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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