Variant report

Variant	rs73921338
Chromosome Location	chr2:21142200-21142201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10175547	1.00[AMR][1000 genomes]
rs55830999	0.89[AFR][1000 genomes]
rs55867127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57732174	1.00[AMR][1000 genomes]
rs59362958	1.00[AMR][1000 genomes]
rs72654431	0.96[AFR][1000 genomes]
rs73918004	0.93[AFR][1000 genomes]
rs73918014	0.96[AFR][1000 genomes]
rs73918050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919811	1.00[AMR][1000 genomes]
rs73920524	1.00[AMR][1000 genomes]
rs73921321	1.00[AMR][1000 genomes]
rs73921323	1.00[AMR][1000 genomes]
rs73921324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21141400-21142200	Weak transcription	Ovary	ovary
3	chr2:21141600-21142600	Weak transcription	Fetal Kidney	kidney
4	chr2:21142200-21142400	Enhancers	Ovary	ovary
5	chr2:21142200-21143000	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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