Variant report

Variant	rs73918050
Chromosome Location	chr2:21268612-21268613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10175547	1.00[AMR][1000 genomes]
rs55830999	0.86[AFR][1000 genomes]
rs55867127	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57732174	1.00[AMR][1000 genomes]
rs59056084	1.00[AMR][1000 genomes]
rs59362958	1.00[AMR][1000 genomes]
rs72654431	0.93[AFR][1000 genomes]
rs73918004	0.89[AFR][1000 genomes]
rs73918014	0.93[AFR][1000 genomes]
rs73919811	1.00[AMR][1000 genomes]
rs73920524	1.00[AMR][1000 genomes]
rs73921321	1.00[AMR][1000 genomes]
rs73921323	1.00[AMR][1000 genomes]
rs73921324	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921325	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921329	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21266800-21270200	Weak transcription	Ovary	ovary
2	chr2:21267000-21270000	Weak transcription	Gastric	stomach
3	chr2:21267400-21271200	Enhancers	Fetal Intestine Small	intestine
4	chr2:21267600-21271200	Enhancers	Fetal Intestine Large	intestine
5	chr2:21268200-21270000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:21268200-21270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:21268200-21270000	Enhancers	HepG2	liver
8	chr2:21268400-21269200	Weak transcription	Lung	lung
9	chr2:21268400-21270000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:21268400-21270200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:21268400-21270200	Weak transcription	Spleen	Spleen
12	chr2:21268600-21269600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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