Variant report

Variant	rs56696610
Chromosome Location	chr2:30351717-30351718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30344144..30346058-chr2:30351216..30353402,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12052275	0.94[ASN][1000 genomes]
rs1345151	0.94[ASN][1000 genomes]
rs1374724	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1509576	0.94[ASN][1000 genomes]
rs1509579	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17009154	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17009178	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2361751	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3768669	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3768670	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3768671	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4951982	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4952094	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57641749	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6547994	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6710956	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6718385	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6719849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739748	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6752385	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558465	0.81[ASN][1000 genomes]
rs7585317	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7585724	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7603389	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7608690	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs935486	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30350600-30359200	Weak transcription	NHEK	skin
2	chr2:30351600-30351800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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