Variant report

Variant	rs12052275
Chromosome Location	chr2:30316657-30316658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1345151	0.88[ASN][1000 genomes]
rs1374724	0.93[ASN][1000 genomes]
rs1509576	0.88[ASN][1000 genomes]
rs1509579	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17009154	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009178	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17009181	0.83[EUR][1000 genomes]
rs1947144	0.84[ASN][1000 genomes]
rs2361751	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768668	0.83[EUR][1000 genomes]
rs3768669	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3768670	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3768671	0.94[ASN][1000 genomes]
rs3886897	0.84[ASN][1000 genomes]
rs4332963	0.84[ASN][1000 genomes]
rs4603808	0.84[ASN][1000 genomes]
rs4951982	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4952093	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4952094	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56696610	0.94[ASN][1000 genomes]
rs57641749	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6547994	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6710956	0.87[ASN][1000 genomes]
rs6718385	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6719849	0.94[ASN][1000 genomes]
rs6739748	0.98[ASN][1000 genomes]
rs6752385	0.94[ASN][1000 genomes]
rs7558465	0.83[ASN][1000 genomes]
rs7585317	0.92[ASN][1000 genomes]
rs7585724	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7596566	0.84[ASN][1000 genomes]
rs7603389	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7608690	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935486	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30316000-30318200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:30316400-30319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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