Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12052275	0.84[ASN][1000 genomes]
rs1345151	0.81[ASN][1000 genomes]
rs1509576	0.81[ASN][1000 genomes]
rs1509578	0.87[EUR][1000 genomes]
rs1509579	0.80[ASN][1000 genomes]
rs1947144	0.91[ASN][1000 genomes]
rs2361745	0.91[EUR][1000 genomes]
rs2361746	0.83[EUR][1000 genomes]
rs2361751	0.84[ASN][1000 genomes]
rs3886897	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603808	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951982	0.81[ASN][1000 genomes]
rs4952094	0.84[ASN][1000 genomes]
rs4952097	0.92[EUR][1000 genomes]
rs4952099	0.83[EUR][1000 genomes]
rs4952101	0.88[EUR][1000 genomes]
rs6547992	0.85[EUR][1000 genomes]
rs6547997	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6739748	0.82[ASN][1000 genomes]
rs6741070	0.83[EUR][1000 genomes]
rs7558409	0.92[EUR][1000 genomes]
rs7585724	0.80[ASN][1000 genomes]
rs7596566	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603389	0.80[ASN][1000 genomes]
rs7608690	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30316000-30318200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:30316400-30319400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:30318000-30318800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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